Pupmapper

A Python tool for calculating pileup mappability scores to identify genomic regions that are challenging for short-read variant calling.

Pitfalls of bacterial pan-genome analysis approaches

A systematic evaluation of how assembly type, annotation pipeline, and pan-genome software each drive variability in core and accessory genome estimates across bacterial species.

Bioinformatics, Volume 41, Issue 5, May 2025

Complete genome assembly of a virulent barcoded M. tuberculosis Erdman strain

A complete, closed genome assembly and annotation of an M. tuberculosis Erdman strain widely used in non-human primate tuberculosis research.

Microbiology Resource Announcements, February 2025